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Revision as of 15:39, 7 December 2010
, 15:39, 7 December 2010Created page with '== SAM/BAM support conversion between '=' and the base in a sequence == '''Request:''' To be able to call SamRecord::getSequence and have it return the sequence with '=' or with…'
== SAM/BAM support conversion between '=' and the base in a sequence ==
'''Request:''' To be able to call SamRecord::getSequence and have it return the sequence with '=' or with the correct bases.
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'''Requester:''' Goncalo Abecasis & Hyun Min Kang
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'''Date Requested:''' Nov 23, 2010?
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=== Notes ===
It was requested to have this handled within the getSequence call so the user doesn't have to convert the sequence after calling getSequence.
=== Proposed Solution ===
....More details coming soon!
Added a class, <code>SamQuerySeqWithRef</code>, with methods <code>seqWithEquals</code> and <code>seqWithoutEquals</code>
<p>
'''Request:''' To be able to call SamRecord::getSequence and have it return the sequence with '=' or with the correct bases.
<p>
'''Requester:''' Goncalo Abecasis & Hyun Min Kang
<p>
'''Date Requested:''' Nov 23, 2010?
<p>
=== Notes ===
It was requested to have this handled within the getSequence call so the user doesn't have to convert the sequence after calling getSequence.
=== Proposed Solution ===
....More details coming soon!
Added a class, <code>SamQuerySeqWithRef</code>, with methods <code>seqWithEquals</code> and <code>seqWithoutEquals</code>
<p>
