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346 bytes added ,  17:25, 21 September 2010
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** Don't have a quality score for deletions/skips, but do for insertions & clips...should those be added?
 
** Don't have a quality score for deletions/skips, but do for insertions & clips...should those be added?
    +
Sum Quality (just mismatches) - only read position 17 - Quality: > = 62-33 = 29
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Sum Quality (mismatches & insertions) - >45> = (62-33) + (52-33) + (53-33) + (62-33) = 29+19+20+29 = 97
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Sum Quality (mismatches & insertions & soft clips) - >>9>45> = (62-33) + (62-33) + (57-33) + (62-33) + (52-33) + (53-33) + (62-33) = 29+29+24+29+19+20+29 = 179
     

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