3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
|-
|-
| FLAG is [0, (2^16)-1]
| FLAG is [0, (2^16)-1]
|style="background-color:green;"|
|style="background-color:green;"| Parse Error since it will be written into a 16 bit field.
|style="background-color:grey;"| N/A: only a 16 bit field
|style="background-color:grey;"| N/A: only a 16 bit field
|style="background-color:green;"|
|style="background-color:green;"|
|-
|-
| POS is [0, (2^29)-1]
| POS is [0, (2^29)-1]
|style="background-color:green;"|
|style="background-color:green;"| Parse Error if it can't fit in the 32 bit field, other out of range is a validation error.
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:green;"|
|style="background-color:green;"|
| MAPQ is an integer [0-9]+
| MAPQ is an integer [0-9]+
|style="background-color:green;"|
|style="background-color:green;"|
|style="background-color:red;"|
|style="background-color:grey;"| N/A: just interpret the bits as an int.
|style="background-color:red;"|
|style="background-color:green;"|
|style="background-color:red;"|
|style="background-color:grey;"| N/A: just interpret the bits as an int.
|-
|-
| MAPQ is [0, (2^8)-1]
| MAPQ is [0, (2^8)-1]
|style="background-color:red;"|
|style="background-color:green;"| Parse Error since it will be written into an 8 bit field.
|style="background-color:red;"|
|style="background-color:grey;"| N/A: only a 8 bit field
|style="background-color:red;"|
|style="background-color:green;"|
|style="background-color:red;"|
|style="background-color:grey;"| N/A: only a 8 bit field
|-
|-
| <nowiki>CIGAR ([0-9]+[MIDNSHP])+|\*</nowiki>
| <nowiki>CIGAR ([0-9]+[MIDNSHP])+|\*</nowiki>
