Changes

From Genome Analysis Wiki
Jump to navigationJump to search
Line 17: Line 17:  
|style="background-color:red;"|
 
|style="background-color:red;"|
 
|style="background-color:red;"|
 
|style="background-color:red;"|
 +
|-
 +
| If HD line is there, VN is also there.
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|-
 +
| HD/VN is not in valid format /^[0-9]+\.[0-9]+$/
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|-
 +
| HD/SO is a valid value (unsorted, queryname, coordinate)
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|-
 +
| SQ/SN all SQ lines have a unique SN field
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|-
 +
| SQ/LN is in the range [1, (2^29) -1]
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|-
 +
| SQ/LN is not a number
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|-
 +
| RG/ID all RG lines have a unique ID field
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|-
 +
| RG/PL is a valid value (ILLUMINA, SOLID, LS454, HELICOS, PACBIO)
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
|style="background-color:red;"|
 +
 +
 +
 +
 
|}
 
|}
  

Navigation menu