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'''NOTE: Not all validation Criteria has been listed here, and not all listed here have been implemented (Implemented checks are marked green.)'''
=== SAM Header Validation Rules ===
=== SAM Header Validation Rules ===
TODO
TODO
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:red;"|
|-
| Header has X-lines or fewer (or a max number of SQ lines (this was a problem once of a file with a crazy number of header lines)
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:red;"|
|}
|}
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:red;"|
|-
| CIGAR string matches the length of SEQ if both are not "*"
|style="background-color:green;"|
|style="background-color:green;"|
|style="background-color:green;"|
|style="background-color:red;"|
|style="background-color:red;"|
|-
|-
|style="background-color:red;"|
|style="background-color:red;"|
|-
|-
| If QUAL is not “*” it is the same length as SEQ.
| If QUAL and SEQ are not “*” they are the same length.
|style="background-color:red;"|
|style="background-color:green;"|
|style="background-color:red;"|
|style="background-color:red;"|
|style="background-color:green;"|
|style="background-color:red;"|
|style="background-color:red;"|
|-
|-
