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45 bytes added
, 12:43, 13 April 2010
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| ! width="10%"|BAM | | ! width="10%"|BAM |
| |- | | |- |
− | | If SO flag is set in the header, fail if the file is not sorted. | + | | If specified to check sort order (either based on SO flag or user specifies coordinate or query name). |
− | |style="background-color:red;"| | + | |style="background-color:green;"| |
− | |style="background-color:red;"| | + | |style="background-color:green;"| |
− | |style="background-color:red;"| | + | |style="background-color:green;"| |
− | |style="background-color:red;"| | + | |style="background-color:green;"| |
| |} | | |} |
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| **Same question for MRNM = “*” and MPOS & ISIZE = 0 | | **Same question for MRNM = “*” and MPOS & ISIZE = 0 |
| *Comment says: “The name of a pair/read is required to be unique in the SAM file, but one pair/read may appear multiple times in different alignment records, representing multiple or split hits.” - Is there anything here that needs to be validated??? | | *Comment says: “The name of a pair/read is required to be unique in the SAM file, but one pair/read may appear multiple times in different alignment records, representing multiple or split hits.” - Is there anything here that needs to be validated??? |
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| == BamFile Classes == | | == BamFile Classes == |
| [[BamFile]] | | [[BamFile]] |