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Revision as of 10:33, 10 December 2014
, 10:33, 10 December 2014→Running GotCloud/GenomeSTRiP Metadata Pipeline
In principle, the metadata can be created from the input BAM files by running the following command
In principle, the metadata can be created from the input BAM files by running the following command
perl ${GC}/bin/genomestrip.pl --run-metadata --conf ${SS}/gotcloud.conf --numjobs 12 --base-prefix ${SS} --outdir ${OUT}
'''WAIT!!!!! DO NOT RUN THIS COMMAND, because it will take >1 hour to finish'''.
Instead, let's look what the output would have looked like.
ls ${SS}/metadata
computerc.args.list
computerc.args.list
cpt
cpt
spans.args.list
spans.args.list
spans.dat
spans.dat
The directory contains metadata output and other intermediate files produced by "GenomeSTRiP SVProcess" step.
The directory contains metadata output and other intermediate files produced by "GenomeSTRiP SVProcess" step.
