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, 10:33, 10 December 2014
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| In principle, the metadata can be created from the input BAM files by running the following command | | In principle, the metadata can be created from the input BAM files by running the following command |
| + | perl ${GC}/bin/genomestrip.pl --run-metadata --conf ${SS}/gotcloud.conf --numjobs 12 --base-prefix ${SS} --outdir ${OUT} |
| + | |
| + | '''WAIT!!!!! DO NOT RUN THIS COMMAND, because it will take >1 hour to finish'''. |
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| + | Instead, let's look what the output would have looked like. |
| + | |
| + | ls ${SS}/metadata |
| + | |
| computerc.args.list | | computerc.args.list |
| cpt | | cpt |
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| spans.args.list | | spans.args.list |
| spans.dat | | spans.dat |
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− | '''WAIT!!!!! DO NOT RUN THIS COMMAND, because it will take >1 hour to finish'''.
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− | Instead, let's look what the output would have looked like.
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− | ls ${SS}/metadata
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− | cpt depth depth.dat gcprofile gcprofiles.zip genome_sizes.txt isd isd.dist.bin spans spans.dat
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| The directory contains metadata output and other intermediate files produced by "GenomeSTRiP SVProcess" step. | | The directory contains metadata output and other intermediate files produced by "GenomeSTRiP SVProcess" step. |