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Revision as of 00:03, 18 June 2014
, 00:03, 18 June 2014→Overview of GotCloud/GenomeSTRiP pipeline
* Genotyping step : Iterate discovered variants across the samples and calculate the genotype likelihood of for each possible genotype.
* Genotyping step : Iterate discovered variants across the samples and calculate the genotype likelihood of for each possible genotype.
In addition, if one wants to genotype structural variants from other structural variant caller, there is a step available.
* Third-party Genotyping and Filtering step : Perform genotyping on the variant sites specified by an input VCF, and also perform variant filtering.
* Third-party Genotyping and Filtering step : Perform genotyping on the variant sites specified by an input VCF, and also perform variant filtering.
