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Revision as of 01:28, 18 June 2014
, 01:28, 18 June 2014→Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
time perl $GC/bin/genomestrip.pl -run-thirdparty --in-vcf $EXT/1kg.phase1.chr22.36Mb.sites.vcf --metadata $IN/metadata --out $OUT/sv --conf $IN/gotcloud.conf --region 22:36000000-37000000 --numjobs 4
time perl $GC/bin/genomestrip.pl -run-thirdparty --in-vcf $EXT/1kg.phase1.chr22.36Mb.sites.vcf --metadata $IN/metadata --out $OUT/sv --conf $IN/gotcloud.conf --region 22:36000000-37000000 --numjobs 4
This will take ~2 minutes to finish.
This will take ~1 minute to finish.
You can also check the output by running
You can also check the output by running
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== What does a real SV look like? ==
== What does a real SV look like? ==
