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Revision as of 11:41, 30 June 2014
, 11:41, 30 June 2014→GotCloud Configuration File
Check out the GenomeStrip specific settings at the end of the configuration file
Check out the GenomeStrip specific settings at the end of the configuration file
tail -n 7 ${SS}/gotcloud.conf
tail -n 8 ${SS}/gotcloud.conf
<ul>
<ul>
## GenomeSTRIP
## GenomeSTRIP
#############################
#############################
GENOMESTRIP_OUT = $(OUT_DIR)/sv
GENOMESTRIP_SVTOOLKIT_DIR = svtoolkit
GENOMESTRIP_MASK_FASTA = $(GENOMESTRIP_SVTOOLKIT_DIR)/ref/human_g1k_v37.chr22.mask.100.fasta
GENOMESTRIP_MASK_FASTA = $(GENOMESTRIP_SVTOOLKIT_DIR)/ref/human_g1k_v37.chr22.mask.100.fasta
GENOMESTRIP_PLOIDY_MAP = $(GENOMESTRIP_SVTOOLKIT_DIR)/conf/humgen_g1k_v37_ploidy.chr22.map
GENOMESTRIP_PLOIDY_MAP = $(GENOMESTRIP_SVTOOLKIT_DIR)/conf/humgen_g1k_v37_ploidy.chr22.map
