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Revision as of 09:05, 11 July 2014
, 09:05, 11 July 2014→Goals of This Session
Please refer to [[Media:Seqshop cnv partb 2014 06.pdf|Lecture slides]] for more general background.
Please refer to [[Media:Seqshop cnv partb 2014 06.pdf|Lecture slides]] for more general background.
GenomeSTRiP was developed at the Broad Institute and at the McCarroll Lab at the Harvard Medical School Department of Genetics: http://www.broadinstitute.org/software/genomestrip/
If you use GenomeSTRiP for your research, please cite it:
Handsaker RE, Korn JM, Nemesh J, McCarroll SA
Discovery and genotyping of genome structural polymorphism by sequencing on a population scale.
Nature genetics 43, 269-276 (2011)
PMID: 21317889
GenomeStrip is currently included in with the seqshop example data under the svtoolkit directory. We have added the bin/ sub-directory to add a high level pipeline that will run genomestrip in the same framework as GotCloud.
== Setup in person at the SeqShop Workshop ==
== Setup in person at the SeqShop Workshop ==
