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If you are interested in rare variants that are not identified by 1000G, you can extract them by running
 
If you are interested in rare variants that are not identified by 1000G, you can extract them by running
  zcat $OUT/wgs.filtered.rsid.anno.exon.vcf.gz | grep "EXTFILTER=NA,NA" | grep -v -w "0/0" | grep -v "less"
+
  zcat $OUT/wgs.filtered.rsid.anno.exon.vcf.gz | grep "EXTFILTER=NA,NA" | grep -v -w "0/0" | less
 
   
 
   
 
For example,  
 
For example,  

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