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SeqShop: Calling Your Own Genome, December 2014 (view source)

Revision as of 23:14, 8 December 2014

2 bytes removed ,  23:14, 8 December 2014
→‎Configuration Updates
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Specify the target region:
 
Specify the target region:
 
  UNIFORM_TARGET_BED = /net/seqshop-server/home/mktrost/seqshop/singleSample/20130108.exome.targets.bed
 
  UNIFORM_TARGET_BED = /net/seqshop-server/home/mktrost/seqshop/singleSample/20130108.exome.targets.bed
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* See [[http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline#Targeted.2FExome_Sequencing_Settings|Targeted/Exome Sequenceing Settings]] for more information on the GotCloud configuration settings for running Targeted/Exome runs.
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* See [http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline#Targeted.2FExome_Sequencing_Settings|Targeted/Exome Sequenceing Settings] for more information on the GotCloud configuration settings for running Targeted/Exome runs.
    
=== Running SnpCall ===
 
=== Running SnpCall ===
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/12225"

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