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SeqShop: Calling Your Own Genome, December 2014 (view source)

Revision as of 00:09, 9 December 2014

1 byte added ,  00:09, 9 December 2014
→‎Indel Step 2 (Day 2): Checking Indel
Line 238: Line 238:  
* all.genotypes.vcf.gz.tbi.log - log
 
* all.genotypes.vcf.gz.tbi.log - log
 
* concat.log - log
 
* concat.log - log
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==== Looking at final INDEL VCF ====
 
==== Looking at final INDEL VCF ====
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           2 alleles (ins/del)            :          169198 (0.89) [79504/89694]
 
           2 alleles (ins/del)            :          169198 (0.89) [79504/89694]
 
           >=3 alleles (ins/del)          :              0 (-nan) [0/0]
 
           >=3 alleles (ins/del)          :              0 (-nan) [0/0]
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</div>
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</div>
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/12230"

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