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Revision as of 22:06, 10 December 2014
, 22:06, 10 December 2014→Friday
https://docs.google.com/forms/d/1TB6AqjmsC6Dr6YK2CnmRZFWTN51aHXkk20AXOMupuKM/viewform
https://docs.google.com/forms/d/1TB6AqjmsC6Dr6YK2CnmRZFWTN51aHXkk20AXOMupuKM/viewform
=== SeqShop: Ancestry On Your Own Genome, December 2014 ===
=== SeqShop: Ancestry On Your Own Genome, December 2014 ===
[[SeqShop: Ancestry On Your Own Genome, December 2014]]
[[SeqShop: Ancestry On Your Own Genome, December 2014]]
=== Reviewing Indel Results ===
Set these values. Also, be sure to specify your sample name (or NA12878) instead of SampleXX
export SAMPLE=SampleXX
source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt
Look in the output directory
Look in the output directory
ls ~/$SAMPLE/output
ls ~/$SAMPLE/output
The insertion deletion ratio increases from 0.91 to 0.92.
The insertion deletion ratio increases from 0.91 to 0.92.
=== Friday: Reviewing SNPCALL Results ===
Look in the output directory
ls ~/$SAMPLE/output
Look at the vcfs:
ls ~/$SAMPLE/output/vcfs
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