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, 15:22, 12 December 2014
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| If you want to add rsIDs to your variant files, you can do this by running the following command | | If you want to add rsIDs to your variant files, you can do this by running the following command |
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− | $HK/vcf-add-rsid -vcf $OUT/vcfs/chr1/chr1.filtered.vcf.gz --db $HK../data/dbSNP.b138/dbsnp_138.b37.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz | + | $HK/vcf-add-rsid -vcf $OUT/vcfs/chr1/chr1.filtered.vcf.gz --db $HK/../data/dbSNP.b138/dbsnp_138.b37.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz |
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| If you want to run this command across all chromosomes in parallel, you can use the special script run-command-wgs | | If you want to run this command across all chromosomes in parallel, you can use the special script run-command-wgs |