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Revision as of 06:41, 20 June 2014
, 06:41, 20 June 2014→Chromosome 20
Now add the chr20 BAMs to your new bam list:
Now add the chr20 BAMs to your new bam list:
cat $IN/chr20/bam.20.index >> $CHR20_OUT/bam.20.index
cat $IN/chr20/bam.20.index >> $CHR20_OUT/bam.20.index
We are going to run on the cluster, so edit the first line of $CHR20_OUT/bam.20.index to give the cluster path to your info file.
nedit $CHR20_OUT/bam.20.index
Replace the /home on the first line with /net/seqshop-server
Verify you have 101 lines in your list:
Verify you have 101 lines in your list:
