From Genome Analysis Wiki
Jump to navigationJump to search
4 bytes added
, 09:26, 22 May 2015
Line 296: |
Line 296: |
| | | |
| Or you can run multiple chromosomes in parallel in one command | | Or you can run multiple chromosomes in parallel in one command |
− | $HK/run-command-wgs --cmd "$EPACTS/bin/epacts anno --in $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.anno.vcf.gz" --numjobs 6 | + | $HK/run-make --repeat-chr --cmd "$EPACTS/bin/epacts anno --in $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.anno.vcf.gz" --numjobs 6 |
− |
| + | |
| ==== Extracting only exonic SNPs ==== | | ==== Extracting only exonic SNPs ==== |
| | | |