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| {| class="wikitable" cellpadding=5 | | {| class="wikitable" cellpadding=5 |
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− | ! style="background:#ABE" | Monday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical | + | ! style="background:#ABE" | Monday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' |
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| | [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]] | | | [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]] |
| | [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Practical Intro]] | | | [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Practical Intro]] |
| + | |rowspan="3" | ''[[SeqShop: Aligning Your Own Genome, December 2014|SeqShop: Aligning Your Own Genome]]'' |
| |- | | |- |
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| | [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]] | | | [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]] |
− | | [[SeqShop: Sequence Mapping and Assembly Practical, December 2014|SeqShop: Sequence Mapping and Assembly Practical]] | + | | |
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| | [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]] | | | [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]] |
− | | [http://iobio.io Live experimentation with IOBIO] | + | | [[SeqShop: Sequence Mapping and Assembly Practical, December 2014|SeqShop: Sequence Mapping and Assembly Practical]] |
− | |-
| + | [http://iobio.io Live experimentation with IOBIO] |
− | |
| |
− | |
| |
− | |''[[SeqShop: Aligning Your Own Genome, December 2014|SeqShop: Aligning Your Own Genome]]''
| |
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− | ! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical | + | ! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' |
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| | [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]] | | | [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]] |
| | [[SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014|SeqShop: Variant Calling and Filtering for SNPs Practical]] | | | [[SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014|SeqShop: Variant Calling and Filtering for SNPs Practical]] |
| + | | rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]'' |
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| | [[SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014|SeqShop: Variant Calling and Filtering for INDELs Practical]] | | | [[SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014|SeqShop: Variant Calling and Filtering for INDELs Practical]] |
| |- | | |- |
− | |
| + | ! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' |
− | |
| |
− | | ''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
| |
− | |-
| |
− | ! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical | |
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| | | | | |
| | [[Media:Dec2014 Analysis of SV.pdf|Analysis of Structural Variation - Part 1]] | | | [[Media:Dec2014 Analysis of SV.pdf|Analysis of Structural Variation - Part 1]] |
− | [[Media:TBD|Analysis of Structural Variation - Part 2]] | + | [[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]] |
| | [[SeqShop: Analysis of Structural Variation Practical, December 2014|SeqShop: Analysis of Structural Variation Practical]] | | | [[SeqShop: Analysis of Structural Variation Practical, December 2014|SeqShop: Analysis of Structural Variation Practical]] |
| + | |''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]'' |
| |- | | |- |
− | ! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical | + | ! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' |
| |- | | |- |
| | | | | |
− | | [[Media:TBD|Estimates of Genetic Ancestry]] | + | | [[Media:DecWorshop2014-ancestry.pdf|Estimates of Genetic Ancestry]] |
− | | [[SeqShop: Estimates of Genetic Ancestry Practical, December 2014| SeqShop: Estimates of Genetic Ancestry Practical]] | + | |[[SeqShop: Estimates of Genetic Ancestry Practical, December 2014| SeqShop: Estimates of Genetic Ancestry Practical]] |
| + | | rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]'' |
| |- | | |- |
| | | | | |
− | | [[Media:TBD|Genetic Association Analysis]] | + | | [[Media:Seqshop genetic association analysis 141211.pdf|Genetic Association Analysis]] |
− | | [[SeqShop: Genetic Association Analysis Practical, December 2014|SeqShop: Genetic Association Analysis Practical]] | + | | |
| + | |- |
| + | ! style="background:#ABE" | Friday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' |
| |- | | |- |
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| | | | | |
− | | [[SeqShop: Ancestry On Your Own Genome, December 2014|SeqShop: Ancestry On Your Own Genome]] | + | |[[SeqShop: Genetic Association Analysis Practical, December 2014|SeqShop: Genetic Association Analysis Practical]] |
− | |-
| + | |rowspan="2"|''[[SeqShop: Ancestry On Your Own Genome, December 2014|SeqShop: Ancestry On Your Own Genome]]'' |
− | ! style="background:#ABE" | Friday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical
| + | ''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]'' |
| |- | | |- |
| | | | | |
− | | [[Media:TBD|Example of a Whole Genome Association Study]] | + | | [[Media:2014.12_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]] |
− | | ''[[SeqShop: Friday - Practicing what we learned, December 2014| SeqShop: Friday - Practicing what we learned]]'' | + | | |
| |} | | |} |