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, 10:24, 2 February 2017
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| The main purpose of this page is to provide step-by-step command lines for using LASER to estimate ancestry of 6 targeted sequenced samples (2 HapMap trios) in a principal component space generated using genome-wide SNP data from the Human Genome Diversity Project (HGDP). The HGDP reference panel contains genotype data across 632,958 autosomal loci for 938 individuals from 53 populations worldwide. | | The main purpose of this page is to provide step-by-step command lines for using LASER to estimate ancestry of 6 targeted sequenced samples (2 HapMap trios) in a principal component space generated using genome-wide SNP data from the Human Genome Diversity Project (HGDP). The HGDP reference panel contains genotype data across 632,958 autosomal loci for 938 individuals from 53 populations worldwide. |
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− | For more details about the options and usage of LASER, please read the [http://www.sph.umich.edu/csg/chaolong/LASER/LASER_Manual.pdf manual]. | + | For more details about the options and usage of LASER, please read the [http://csg.sph.umich.edu//chaolong/LASER/LASER_Manual.pdf manual]. |
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| == LASER workflow == | | == LASER workflow == |
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| Download and decompress software package: | | Download and decompress software package: |
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− | wget http://www.sph.umich.edu/csg/chaolong/LASER/LASER-2.01.tar.gz | + | wget http://csg.sph.umich.edu//chaolong/LASER/LASER-2.01.tar.gz |
| tar xzvf LASER-2.01.tar.gz | | tar xzvf LASER-2.01.tar.gz |
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