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Revision as of 21:04, 18 June 2014
, 21:04, 18 June 2014→Estimating ancestry coordinates using LASER
Step 0: Generate the reference ancestry space (using the PCA mode of the LASER program)
Step 0: Generate the reference ancestry space (using the PCA mode of the LASER program)
# ./LASER-2.01/laser -g ./HGDP/HGDP_938.geno -pca 1 -k 30 -o HGDP_938
# ./LASER-2.01/laser -g $HGDP/HGDP_938.geno -pca 1 -k 30 -o HGDP_938
The above command takes about 15 mins to finish.
The above command takes about 15 mins to finish.
