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Revision as of 09:47, 10 July 2014
, 09:47, 10 July 2014→Step 2: pileup --> seq
$BAM/121101052.recal.pileup \
$BAM/121101052.recal.pileup \
$BAM/121101415.recal.pileup \
$BAM/121101415.recal.pileup \
$BAM/121101861.recal.pileup &
$BAM/121101861.recal.pileup
In the above command, -b provides the targeted regions to exclude and -i specifies alternative IDs for the BAM files to be used in the .seq file (including popID and indivID).
In the above command, -b provides the targeted regions to exclude and -i specifies alternative IDs for the BAM files to be used in the .seq file (including popID and indivID).
