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Revision as of 10:27, 2 February 2017
, 10:27, 2 February 2017→Download & Build EPACTS
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This tutorial builds on the alignment & snpcall tutorials, if you have not already, please first run those tutorials: [[SeqShop:_Sequence_Mapping_and_Assembly_Practical|Alignment Tutorial]] & [[SeqShop: Variant Calling and Filtering for SNPs Practical|SNP Calling Tutorial]]
This tutorial builds on the alignment & snpcall tutorials, if you have not already, please first run those tutorials: [[SeqShop:_Sequence_Mapping_and_Assembly_Practical, June 2014|Alignment Tutorial]] & [[SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014|SNP Calling Tutorial]]
=== Download & Build EPACTS ===
=== Download & Build EPACTS ===
cd ~/seqshop/
cd ~/seqshop/
* download, decompress, and build the version of epacts that was tested with this tutorial:
* download, decompress, and build the version of epacts that was tested with this tutorial:
wget http://www.sph.umich.edu/csg/kang/epacts/download/EPACTS-3.2.6.tar.gz
wget http://csg.sph.umich.edu//kang/epacts/download/EPACTS-3.2.6.tar.gz
tar xvf EPACTS-3.2.6.tar.gz
tar xvf EPACTS-3.2.6.tar.gz
cd EPACTS-3.2.6
cd EPACTS-3.2.6
