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− | Sequence Analysis Workshop June 16-20, 2014 | + | '''Sequence Analysis Workshop June 16-20, 2014: http://seqshop.sph.umich.edu/ ''' |
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| + | '''Note:''' new versions of these practicals are available at: [[SeqShop: December 2014]] |
| + | * The ones here are the original ones from the June workshop (updated to be run from elsewhere) |
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| {| class="wikitable" cellpadding=5 | | {| class="wikitable" cellpadding=5 |
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− | ! style="background:#ABE" | Topic !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical | + | ! style="background:#ABE" | Monday Lecture !! style="background:#ABE" | Practical |
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− | | Design of Human Genetic Studies | + | | [[Media:2014.06_-_Abecasis_Workshop_Introduction.pdf|Design of Human Genetic Studies]] |
− | | ''link to slides'' | + | | [http://iobio.io Interacting with Sequence Data] |
− | | ''link to practical''
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− | | Sequence Mapping and Assembly | + | | [[Media:Mapping and assembly.pdf|Sequence Mapping and Assembly]] |
− | | ''link to slides''
| + | | [[SeqShop: Sequence Mapping and Assembly Practical, June 2014]] |
− | | [[SeqShop: Sequence Mapping and Assembly Practical]] | |
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− | | Variant Calling and Filtering for SNPs | + | ! style="background:#ABE" | Tuesday Lecture !! style="background:#ABE" | Practical |
− | | ''link to slides''
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− | | [[SeqShop: Variant Calling and Filtering for SNPs Practical]] | |
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− | | Variant Calling and Filtering for INDELs | + | | [[Media:SNPcalling.pdf|Variant Calling and Filtering for SNPs]] |
− | | ''link to slides''
| + | | [[SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014]] |
− | | [[SeqShop: Variant Calling and Filtering for INDELs Practical]] | |
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− | | Analysis of Structural Variation | + | | [[Media:Variant_Calling_and_Filtering_for_INDELs.pdf|Variant Calling and Filtering for INDELs]] |
− | | ''link to slides'' | + | | [[SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014]] |
− | | [[SeqShop: Analysis of Structural Variation Practical]] | |
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− | | Estimates of Genetic Ancestry | + | ! style="background:#ABE" | Wednesday Lecture !! style="background:#ABE" | Practical |
− | | ''link to slides''
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− | | [[SeqShop: Estimates of Genetic Ancestry Practical]] | |
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− | | Genetic Association Analysis | + | | [[Media:Analysis of SV.pdf|Analysis of Structural Variation - Part 1]] |
− | | ''link to slides'' | + | [[Media:Seqshop_cnv_partb_2014_06.pdf|Analysis of Structural Variation - Part 2]] |
− | | [[SeqShop: Genetic Association Analysis Practical]] | + | | [[SeqShop: Analysis of Structural Variation Practical, June 2014]] |
− | |} | + | ''[[SeqShop: Aligning Your Own Genome, June 2014]]'' |
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− | | + | ! style="background:#ABE" | Thursday Lecture !! style="background:#ABE" | Practical |
− | {| class="wikitable" cellpadding=5
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| + | | [[Media:Worshop2014-ancestry.pdf|Estimates of Genetic Ancestry]] |
| + | | [[SeqShop: Estimates of Genetic Ancestry Practical, June 2014]] |
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| + | | [[Media:Seqshop_cnv_partb_2014_06.pdf|Genetic Association Analysis]] |
| + | | [[SeqShop: Genetic Association Analysis Practical, June 2014]] |
| + | |- |
| + | ! style="background:#ABE" | Friday Lecture !! style="background:#ABE" | Practical |
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− | ! colspan="4" style="background:#ABE" | Monday, June 9, 2014
| + | | [[Media:2014.06_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]] |
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| + | | ''[[SeqShop: Friday - Practicing what we learned, June 2014]]'' |
− | | '''Afternoon'''
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− | | '''Check-in is 4pm''' at Kalahari Resort. (Room reservations are in your name) | |
− | * If sharing a room, please check with Laura in advance for room assignments.
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− | |- valign="top"
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− | | '''5:30 P.M.- 5:45 P.M.''' | |
− | Aloeswood Meeting Room
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− | | '''Icebreaker.''' (Gonçalo)
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− | |- valign="top"
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| |} | | |} |