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Sequence Analysis Workshop June 16-20, 2014: http://seqshop.sph.umich.edu/
'''Sequence Analysis Workshop June 16-20, 2014: http://seqshop.sph.umich.edu/ '''
'''Note:''' new versions of these practicals are available at: [[SeqShop: December 2014]]
* The ones here are the original ones from the June workshop (updated to be run from elsewhere)
{| class="wikitable" cellpadding=5
{| class="wikitable" cellpadding=5
|-
|-
| [[Media:Mapping and assembly.pdf|Sequence Mapping and Assembly]]
| [[Media:Mapping and assembly.pdf|Sequence Mapping and Assembly]]
| [[SeqShop: Sequence Mapping and Assembly Practical]]
| [[SeqShop: Sequence Mapping and Assembly Practical, June 2014]]
|-
|-
! style="background:#ABE" | Tuesday Lecture !! style="background:#ABE" | Practical
! style="background:#ABE" | Tuesday Lecture !! style="background:#ABE" | Practical
|-
|-
| [[Media:SNPcalling.pdf|Variant Calling and Filtering for SNPs]]
| [[Media:SNPcalling.pdf|Variant Calling and Filtering for SNPs]]
| [[SeqShop: Variant Calling and Filtering for SNPs Practical]]
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014]]
|-
|-
| [[Media:Variant_Calling_and_Filtering_for_INDELs.pdf|Variant Calling and Filtering for INDELs]]
| [[Media:Variant_Calling_and_Filtering_for_INDELs.pdf|Variant Calling and Filtering for INDELs]]
| [[SeqShop: Variant Calling and Filtering for INDELs Practical]]
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014]]
|-
|-
! style="background:#ABE" | Wednesday Lecture !! style="background:#ABE" | Practical
! style="background:#ABE" | Wednesday Lecture !! style="background:#ABE" | Practical
| [[Media:Analysis of SV.pdf|Analysis of Structural Variation - Part 1]]
| [[Media:Analysis of SV.pdf|Analysis of Structural Variation - Part 1]]
[[Media:Seqshop_cnv_partb_2014_06.pdf|Analysis of Structural Variation - Part 2]]
[[Media:Seqshop_cnv_partb_2014_06.pdf|Analysis of Structural Variation - Part 2]]
| [[SeqShop: Analysis of Structural Variation Practical]]
| [[SeqShop: Analysis of Structural Variation Practical, June 2014]]
''[[SeqShop: Aligning Your Own Genome]]''
''[[SeqShop: Aligning Your Own Genome, June 2014]]''
|-
|-
! style="background:#ABE" | Thursday Lecture !! style="background:#ABE" | Practical
! style="background:#ABE" | Thursday Lecture !! style="background:#ABE" | Practical
|-
|-
| [[Media:Worshop2014-ancestry.pdf|Estimates of Genetic Ancestry]]
| [[Media:Worshop2014-ancestry.pdf|Estimates of Genetic Ancestry]]
| [[SeqShop: Estimates of Genetic Ancestry Practical]]
| [[SeqShop: Estimates of Genetic Ancestry Practical, June 2014]]
|-
|-
| [[Media:Seqshop_cnv_partb_2014_06.pdf|Genetic Association Analysis]]
| [[Media:Seqshop_cnv_partb_2014_06.pdf|Genetic Association Analysis]]
| [[SeqShop: Genetic Association Analysis Practical]]
| [[SeqShop: Genetic Association Analysis Practical, June 2014]]
|-
|-
! colspan="2" style="background:#ABE" | Friday
! style="background:#ABE" | Friday Lecture !! style="background:#ABE" | Practical
|-
|-
| [[Media:2014.06_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]]
| [[Media:2014.06_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]]
| [[SeqShop: Friday - Practicing what we learned]]
| ''[[SeqShop: Friday - Practicing what we learned, June 2014]]''
|}
|}
