Difference between revisions of "SeqShop: May 2015"
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{| class="wikitable" cellpadding=5 | {| class="wikitable" cellpadding=5 | ||
|- | |- | ||
− | ! style="background:#ABE" | + | ! style="background:#ABE" colspan="3"|Monday |
|- | |- | ||
− | + | ! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | |
− | |||
− | |||
− | |||
|- | |- | ||
− | + | | [[Media:2015.05 - Workshop Intro.pdf|Welcome/Design of Human Genetic Studies]] | |
− | | [[Media: | + | | [[Media:May2015 SeqShop - Linux.pdf|SeqShop: Quick intro to Linux]] |
− | | [ | + | |rowspan="2" | ''[[SeqShop: Aligning Your Own Genome, May 2015|SeqShop: Aligning Your Own Genome]]'' |
|- | |- | ||
− | + | | [[Media:Mapping and assembly May2015.pdf|Sequence Mapping and Assembly]] | |
− | | [[Media:Mapping and | ||
| [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]] | | [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]] | ||
|- | |- | ||
− | ! style="background:#ABE" | + | ! style="background:#ABE" colspan="3" | Tuesday |
|- | |- | ||
− | | | + | ! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' |
− | | [[Media: | + | |- |
+ | | [[Media:seqshop_may_2015_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]] | ||
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015|SeqShop: Variant Calling and Filtering for SNPs Practical]] | | [[SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015|SeqShop: Variant Calling and Filtering for SNPs Practical]] | ||
− | | rowspan="2"|''[[SeqShop: Calling Your Own Genome, | + | [http://bam.iobio.io iobio: Visualizing BAM statistics] |
+ | | rowspan="2"|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]'' | ||
+ | |- | ||
+ | | [[Media:Analysis of SV May2015.pdf|Analysis of Structural Variation - Part 1]] | ||
+ | [[Media:May2015 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]] | ||
+ | | [[SeqShop: Analysis of Structural Variation Practical, May 2015|SeqShop: Analysis of Structural Variation Practical]] | ||
+ | |- | ||
+ | ! style="background:#ABE" colspan="3" | Wednesday | ||
+ | |- | ||
+ | ! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | ||
|- | |- | ||
− | + | | [[Media:Seqshop 2015 non-SNP variation.pdf|Variant Calling and Filtering for INDELs]] | |
− | | [[Media:Variant Calling and Filtering for INDELs.pdf| | + | [[Media:seqshop_2015_day3_indel_assembly.pdf|More Lessons on Indels + De-novo Assembly Methods]] |
+ | |||
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015|SeqShop: Variant Calling and Filtering for INDELs Practical]] | | [[SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015|SeqShop: Variant Calling and Filtering for INDELs Practical]] | ||
+ | |''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]'' | ||
|- | |- | ||
− | ! style="background:#ABE" | + | ! style="background:#ABE" colspan="3" | Thursday |
|- | |- | ||
− | + | ! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
|- | |- | ||
+ | | [[Media:Stratification.pptx|Estimates of Genetic Ancestry]] | ||
+ | |[[SeqShop: Estimates of Genetic Ancestry Practical, May 2015| SeqShop: Estimates of Genetic Ancestry Practical]] | ||
| | | | ||
− | |||
− | |||
− | |||
|- | |- | ||
− | + | | [[Media:Seqshop genetic association analysis 150521.pptx|Genetic Association Analysis]] | |
− | | [[Media:Seqshop genetic association analysis | ||
|[[SeqShop: Association Analysis, May 2015| SeqShop: Association Analysis]] | |[[SeqShop: Association Analysis, May 2015| SeqShop: Association Analysis]] | ||
+ | | ''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]'' | ||
+ | |- | ||
+ | ! style="background:#ABE" colspan="3" | Friday | ||
|- | |- | ||
− | + | ! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | |
|- | |- | ||
+ | | [[Media:2015.05_-_Workshop_Closing.pdf|Summary]] | ||
| | | | ||
− | | [[ | + | |''[[SeqShop: Ancestry On Your Own Genome, May 2015|SeqShop: Ancestry On Your Own Genome]]'' |
− | |||
− | |||
|- | |- | ||
|} | |} |
Latest revision as of 10:40, 22 May 2015
Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/
Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda
Monday | ||
---|---|---|
Lecture | Practical | Own Genome Analysis |
Welcome/Design of Human Genetic Studies | SeqShop: Quick intro to Linux | SeqShop: Aligning Your Own Genome |
Sequence Mapping and Assembly | SeqShop: Sequence Mapping and Assembly Practical | |
Tuesday | ||
Lecture | Practical | Own Genome Analysis |
Variant Calling and Filtering for SNPs | SeqShop: Variant Calling and Filtering for SNPs Practical | SeqShop: Calling Your Own Genome |
Analysis of Structural Variation - Part 1 | SeqShop: Analysis of Structural Variation Practical | |
Wednesday | ||
Lecture | Practical | Own Genome Analysis |
Variant Calling and Filtering for INDELs | SeqShop: Variant Calling and Filtering for INDELs Practical | SeqShop: Calling Your Own Genome |
Thursday | ||
Lecture | Practical | Own Genome Analysis |
Estimates of Genetic Ancestry | SeqShop: Estimates of Genetic Ancestry Practical | |
Genetic Association Analysis | SeqShop: Association Analysis | SeqShop: Calling Your Own Genome |
Friday | ||
Lecture | Practical | Own Genome Analysis |
Summary | SeqShop: Ancestry On Your Own Genome |