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Revision as of 17:57, 23 November 2014
, 17:57, 23 November 2014→GotCloud FASTQ List File
<li>Need a reminder of the format?</li>
<li>Need a reminder of the format?</li>
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[[File:fqindex.png|750px]]
[[File:fqindexNew.png|500px]]
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<ul>
<ul>
<li>Use cut to extract just the MERGE_NAME & RGID fields </li>
<li>Use cut to extract just the SAMPLE & FASTQ2 fields </li>
cut -f 1,4 ${SS}/align.index
cut -f 1,3 ${SS}/fastq.list
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<ul>
<ul>
<li>HG00553 & HG00640</li>
<li>HG00553 & HG00640</li>
<li>They have multiple unique values in the RGID field</li>
<li>They have multiple FASTQ2 files listed</li>
[[File:fqindexRG.png|800px]]
[[File:FqListFASTQ2.png|400px]]
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