Changes

[[File:GcalignOutBAMm.png|600px]]

[[File:GcalignOutBAMm.png|600px]]

Let's examine at the first 5 lines of the BAM file using [http://samtools.sourceforge.net/samtools.shtml#3 samtools view]:

Let's examine at the first 7 lines of the BAM file using [http://samtools.sourceforge.net/samtools.shtml#3 samtools view]:

  ${GC}/bin/samtools view -h ${OUT}/bams/HG00551.recal.bam|head -n 5

  ${GC}/bin/samtools view -h ${OUT}/bams/HG00551.recal.bam|head -n 7

; What are the chromosome and position of the first record in the BAM file?

; What are the chromosome and position of the first record in the BAM file?

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<ul>

<ul>

<li>Chr 22, Pos: 16114122</li>

<li>Chr 22, Pos: 16918656</li>

</ul>

</ul>

[[File:BamRec.png|650px]]

[[File:BamRecNew.png|650px]]

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</div>

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