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Revision as of 21:49, 12 June 2014
, 21:49, 12 June 2014→Examining Raw Sequence Reads
For this tutorial, we will use FASTQs for 6 1000 Genome samples
For this tutorial, we will use FASTQs for 6 1000 Genome samples
* Subset of FASTQs - should map around CFTR on chr7
ls ${GC}/inputs/fastq/
ls ${GC}/inputs/fastq/
There are 24 fastq files: combination of single-end & paired-end.
There are 24 fastq files: combination of single-end & paired-end.
Use <code>'q'</code> to exit out of <code>less</code>
Use <code>'q'</code> to exit out of <code>less</code>
q
q
[[File:FASTQ.png|700px]]
[[File:FASTQ.png|500px]]
Quality represented as ASCII code of (33 + Phred-scale-quality)
Quality represented as ASCII code of (33 + Phred-scale-quality)
