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If you cancelled GotCloud part way through, just rerun your GotCloud command and it will pick up where it left off.
 
If you cancelled GotCloud part way through, just rerun your GotCloud command and it will pick up where it left off.
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Inside GotCloud align, not only sequence alignment but also pre-processing of sequence data, including deduplication and base quality recalibration are performed along with quality assessment, as illustrated below.
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[[File:Gotcloud_align_detail.png|500px]]
    
== Examining GotCloud Align Output ==
 
== Examining GotCloud Align Output ==

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