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Revision as of 15:19, 24 June 2014
, 15:19, 24 June 2014no edit summary
** How to evaluate the quality of sequence data
** How to evaluate the quality of sequence data
** How to visualize sequence data to examine the reads aligned to particular genomic positions
** How to visualize sequence data to examine the reads aligned to particular genomic positions
== Setup in person at the SeqShop Workshop ==
''This section is specifically for the SeqShop Workshop computers.''
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''If you are not running during the SeqShop Workshop, please skip this section.''
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{{SeqShopLogin}}
{{SeqShopLogin}}
== Setup your run environment==
=== Setup your run environment===
This will setup some environment variables to point you to
* [[GotCloud]] program
* Tutorial input files
* Setup an output directory
source /home/mktrost/seqshop/setup.txt
* You won't see any output after running <code>source</code>
** It silently sets up your environment
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View setup.txt
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[[File:setup.png|500px]]
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== Setup when running on your own outside of the SeqShop Workshop ==
''This section is specifically for running on your own outside of the SeqShop Workshop.''
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''If you are running during the SeqShop Workshop, please skip this section.''
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=== Download the example data ===
=== Setup your run environment ===
This will setup some environment variables to point you to
This will setup some environment variables to point you to
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[[File:setup.png|500px]]
[[File:setup.png|500px]]
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