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, 16:04, 25 June 2014
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| Remember, use <code>'q'</code> to exit out of <code>less</code> | | Remember, use <code>'q'</code> to exit out of <code>less</code> |
| q | | q |
− |
| |
− | If you want to access the FASTA file by position, you can use <code>samtools faidx</code> command
| |
− | ${GC}/bin/samtools faidx ${SS}/ref22/human.g1k.v37.chr22.fa 22:36000000 | less
| |
− | or
| |
− | ${GC}/bin/samtools faidx ${SS}/ref22/human.g1k.v37.chr22.fa 22:36000000-36000100
| |
| | | |
| ; Where is the reference sequence? | | ; Where is the reference sequence? |
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| </ul> | | </ul> |
| </ul> | | </ul> |
| + | |
| + | If you want to access the FASTA file by position, you can use <code>samtools faidx</code> command |
| + | ${GC}/bin/samtools faidx ${SS}/ref22/human.g1k.v37.chr22.fa 22:36000000 | less |
| + | or |
| + | ${GC}/bin/samtools faidx ${SS}/ref22/human.g1k.v37.chr22.fa 22:36000000-36000100 |
| | | |
| === GotCloud FASTQ Index File === | | === GotCloud FASTQ Index File === |