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Revision as of 16:21, 25 June 2014
, 16:21, 25 June 2014→GotCloud FASTQ Index File
Let's look a look at the index file I prepared for this tutorial:
Let's look a look at the index file I prepared for this tutorial:
less -S ${IN}/align.index
less -S ${SS}/align.index
Remember, use <code>'q'</code> to exit out of <code>less</code>
Remember, use <code>'q'</code> to exit out of <code>less</code>
<ul>
<ul>
<li>Use cut to extract just the MERGE_NAME & RGID fields </li>
<li>Use cut to extract just the MERGE_NAME & RGID fields </li>
cut -f 1,4 ${IN}/align.index
cut -f 1,4 ${SS}/align.index
</ul>
</ul>
</div>
</div>
