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, 10:59, 9 July 2014
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| | You will see the names of all the files included in the example data scrolling on the screen as they are unpacked from the tar file. | | You will see the names of all the files included in the example data scrolling on the screen as they are unpacked from the tar file. |
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| − | === Setup your run environment ===
| + | {{SeqShopRemoteEnv}} |
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| − | Environment variables will be used throughout the tutorial.
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| − | We recommend that you setup these variables so you won't have to modify every command in the tutorial.
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| − | # Point to where you installed GotCloud
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| − | # Point to where you installed the seqshop files
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| − | # Point to where you want the output to go
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| − | <div class="mw-collapsible" style="width:500px">
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| − | :Using bash (replace the paths below with the appropriate paths):
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| − | <div class="mw-collapsible-content">
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| − | ::<pre>export GC=~/seqshop/gotcloud export SS=~/seqshop/example export OUT=~/seqshop/output</pre>
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| − | </div>
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| − | </div>
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| − | <div class="mw-collapsible mw-collapsed" style="width:500px">
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| − | :Using tcsh (replace the paths below with the appropriate paths):
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| − | <div class="mw-collapsible-content">
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| − | ::<pre>setenv GC ~/seqshop/gotcloud setenv SS ~/seqshop/example setenv OUT ~/seqshop/output</pre>
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| − | </div>
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| − | </div>
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| − | </div>
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| − | </div>
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| | == Examining [[GotCloud]] Align Input Files == | | == Examining [[GotCloud]] Align Input Files == |
