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Revision as of 20:56, 16 June 2014
, 20:56, 16 June 2014→Examining GotCloud Indel Input files
== Examining GotCloud Indel Input files ==
== Examining GotCloud Indel Input files ==
The GotCloud Indel caller takes the same inputs as GotCloud snpcall.
If you want a reminder, of what they look like, here is a link to the previous tutorial : [[SeqShop:_Variant_Calling_and_Filtering_for_SNPs_Practical#Examining_GotCloud_SnpCall_Input_files|GotCloud SnpCall Input Files]]
== Running GotCloud Indel ==
== Running GotCloud Indel ==
${GC}/gotcloud indel --conf ${IN}/gotcloud.conf --numjobs 2 --region 22:36000000-37000000
${GC}/gotcloud indel --conf ${IN}/gotcloud.conf --numjobs 2 --region 22:36000000-37000000
