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== Setup in person at the SeqShop Workshop ==

''This section is specifically for the SeqShop Workshop computers.''

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''If you are not running during the SeqShop Workshop, please skip this section.''

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== Setup when running on your own outside of the SeqShop Workshop ==

''This section is specifically for running on your own outside of the SeqShop Workshop.''

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''If you are running during the SeqShop Workshop, please skip this section.''

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== Examining GotCloud SnpCall Input files ==

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=== ~~Sequnce~~ Alignment Files: BAM Files ===

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=== Sequence Alignment Files: BAM Files ===

Per sample BAM files contain sequence reads that are mapped to positions in the genome.

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Aren't you glad you didn't have to configure & run each one yourself?

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== Return to Workshop Wiki Page ==

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Return to main workshop wiki page: [[SeqShop: December 2014]]

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SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 (view source)