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36 bytes added
, 10:41, 26 June 2014
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| Now that we have all of our input files, we need just a simple command to run: | | Now that we have all of our input files, we need just a simple command to run: |
− | ${GC}/gotcloud snpcall --conf ${IN}/gotcloud.conf --numjobs 4 --region 22:36000000-37000000 | + | ${GC}/gotcloud snpcall --conf ${SS}/gotcloud.conf --numjobs 4 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT} |
| * --numjobs tells GotCloud how many jobs to run in parallel | | * --numjobs tells GotCloud how many jobs to run in parallel |
| ** Depends on your system | | ** Depends on your system |