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, 13:29, 10 March 2011
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| perl ${BIN}/vcfSummary.pl --vcf ${OUT}/NA12878.highcov.sample.vcf --dbsnp ${REF}/dbsnp_129_b37.rod.chr20.map --bfile ${REF}/hapmap3_r3_b37_fwd.consensus.qc.poly.chr20 | | perl ${BIN}/vcfSummary.pl --vcf ${OUT}/NA12878.highcov.sample.vcf --dbsnp ${REF}/dbsnp_129_b37.rod.chr20.map --bfile ${REF}/hapmap3_r3_b37_fwd.consensus.qc.poly.chr20 |
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| + | == Filtering Examples in multisample calling == |
| + | * [[Media:Filtering example unfiltered.pdf | (BEFORE FILTERING)]] |
| + | * [[Media:Filtering example.pdf | (AFTER FILTERING)]] |
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| + | == Where can you download this software? == |
| + | samtools-hybrid, glfSingle, superDeDuper, qplot can be downloaded at: |
| + | https://github.com/statgen/statgen |