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perl ${BIN}/vcfSummary.pl --vcf ${OUT}/NA12878.highcov.sample.vcf --dbsnp ${REF}/dbsnp_129_b37.rod.chr20.map --bfile ${REF}/hapmap3_r3_b37_fwd.consensus.qc.poly.chr20
perl ${BIN}/vcfSummary.pl --vcf ${OUT}/NA12878.highcov.sample.vcf --dbsnp ${REF}/dbsnp_129_b37.rod.chr20.map --bfile ${REF}/hapmap3_r3_b37_fwd.consensus.qc.poly.chr20
== Filtering Examples in multisample calling ==
* [[Media:Filtering example unfiltered.pdf | (BEFORE FILTERING)]]
* [[Media:Filtering example unfiltered.pdf | (BEFORE FILTERING)]]
* [[Media:Filtering example.pdf | (AFTER FILTERING)]]
* [[Media:Filtering example.pdf | (AFTER FILTERING)]]
== Where can you download this software? ==
samtools-hybrid, glfSingle, superDeDuper, qplot can be downloaded at:
https://github.com/statgen/statgen
