1,102
edits
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Revision as of 21:33, 15 June 2014
, 21:33, 15 June 2014→GENOTYPE field
===GENOTYPE field===
===GENOTYPE field===
The genotype fields are described as follows:
0/0 : homozygous reference chosen based on in PL.
0/0 : homozygous reference chosen based on PL
0,9,108 : PHRED scaled genotype likelihoods
0,9,108 : PHRED scaled genotype likelihoods
9 : no. of reads covering this variant
9 : no. of reads covering this variant
coverage of the read over the locus
coverage of the read over the locus
or simply an allele that is not accounted for.
or simply an allele that is not accounted for.
10 : genotype quality.
10 : genotype quality
= Analysis =
= Analysis =
