From Genome Analysis Wiki
Jump to navigationJump to search
16 bytes removed
, 16:47, 16 June 2014
Line 321: |
Line 321: |
| To normalize and remove duplicate variants: | | To normalize and remove duplicate variants: |
| | | |
− | vt normalize mills.genotypes.bcf -r ~/ref/vt/grch37/hs37d5.fa | vt mergedups - -o mills.normalized.genotypes.bcf | + | vt normalize mills.genotypes.bcf -r hs37d5.fa | vt mergedups - -o mills.normalized.genotypes.bcf |
| | | |
| and you will observe that 3994 variants had to be left aligned and 1092 variants were removed. | | and you will observe that 3994 variants had to be left aligned and 1092 variants were removed. |