From Genome Analysis Wiki
Jump to navigationJump to search
4 bytes added
, 14:11, 23 August 2012
Line 87: |
Line 87: |
| =Other Tools= | | =Other Tools= |
| | | |
− | * samtools-hybrid - Since many of our tools still rely on GLF files and samtools stopped supporting GLF files, we created a version of samtools that still supports pileup to GLF files AND incorporates the updated BAQ logic. This version is called samtools-hybrid That code can be downloaded at: https://github.com/statgen/samtools-0.1.7a-hybrid | + | * [[samtools-hybrid]] - Since many of our tools still rely on GLF files and samtools stopped supporting GLF files, we created a version of samtools that still supports pileup to GLF files AND incorporates the updated BAQ logic. This version is called samtools-hybrid That code can be downloaded at: https://github.com/statgen/samtools-0.1.7a-hybrid |
| *[[baseQualityCheck]] - tool to calculate the observed base quality vs. empirical base quality (helps to evaluate mappers) | | *[[baseQualityCheck]] - tool to calculate the observed base quality vs. empirical base quality (helps to evaluate mappers) |
| | | |