Changes

= Quality Control Utilities =

= Quality Control Utilities =

[[C++ Executable: fastQValidator|FastQValidator]] -- Check that a FASTQ file conforms to specification.

[[C++ Executable: fastQValidator|FastQValidator]] -- Check that a FASTQ file conforms to specification.

[[BamIdentityCheck]] -- Check that mapped reads are consistent with known genotypes for each individual.

[[GenotypeIDcheck]] -- Check that mapped reads are consistent with known genotypes for each individual.

== File Readers ==

== File Readers ==

[[C++ Library: libbam|BamFile]] -- Reads a BAM/SAM file.   

[[C++ Library: libbam|BamFile]] -- Reads a BAM/SAM file.   

== File Conversion ==

== File Conversion ==

[[bam2FastQ]]  -- Convert BAM files into FastQ files

[[bam2FastQ]]  -- Convert BAM files into FastQ files

= [[Links to Sequence Analysis Tools|Other Useful Links]] =

= [[Links to Sequence Analysis Tools|Other Useful Links]] =