User contributions
24 September 2012
Test EPACTS for DIAGRAM
Download EPACTS
-10
Test EPACTS for DIAGRAM
no edit summary
+37
Test EPACTS for DIAGRAM
Download EPACTS
-8
Test EPACTS for DIAGRAM
Example
+4
Test EPACTS for DIAGRAM
Download EPACTS
+9
Test EPACTS for DIAGRAM
no edit summary
+36
Test EPACTS for DIAGRAM
no edit summary
+13
Test EPACTS for DIAGRAM
no edit summary
-415
Test EPACTS for DIAGRAM
Created page with '== 1. Download and install EPACTS == EPACTS is available for download [http://www.sph.umich.edu/csg/kang/epacts/download/index.html here]. If you want to use EPACTS in a…'
Minimac: 1000 Genomes Imputation Cookbook
X Chromosome Imputation
22 September 2012
11 September 2012
29 August 2012
VcfRefGen
no edit summary
+142
VcfRefGen
Download
+19
VcfRefGen
Example
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VcfRefGen
Example
+82
VcfRefGen
Example
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VcfRefGen
no edit summary
+538
VcfRefGen
no edit summary
+47
VcfRefGen
no edit summary
-9
Minimac
Questions and Comments
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Minimac
no edit summary
+142
VcfRefGen
no edit summary
+42
VcfRefGen
Created page with '''vcfRefGen''' is a tool for generating VCF reference panels for minimac imputation. It reduces VCF files by removing the info field, saving only the GT genotype field and removi…'
28 August 2012
27 August 2012
Minimac: 1000 Genomes Imputation Cookbook
Your Own Data
-5
Minimac: 1000 Genomes Imputation Cookbook
Imputation into Phased Haplotypes - minimac
+66
Minimac: 1000 Genomes Imputation Cookbook
Imputation into Phased Haplotypes - minimac
+417
Minimac: 1000 Genomes Imputation Cookbook
Imputation into Phased Haplotypes - minimac
-4
Minimac: 1000 Genomes Imputation Cookbook
Imputation into Phased Haplotypes - minimac
+23
Minimac: 1000 Genomes Imputation Cookbook
Imputation into Phased Haplotypes - minimac
+116
Minimac: 1000 Genomes Imputation Cookbook
no edit summary
-231
Minimac: 1000 Genomes Imputation Cookbook
no edit summary
+298
Minimac
Reference
+20
Minimac: 1000 Genomes Imputation Cookbook
X Chromosome Imputation
+7
Minimac: 1000 Genomes Imputation Cookbook
X Chromosome Imputation
+59
Minimac: 1000 Genomes Imputation Cookbook
Pre-phasing - MaCH
+46
Minimac: 1000 Genomes Imputation Cookbook
X Chromosome Imputation
+60
Minimac
Running Minimac
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Minimac
using a VCF reference panel
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Minimac
Running Minimac
-1
Minimac
Running Minimac
+7
Minimac
Download
-1
IMPUTE2: 1000 Genomes Imputation Cookbook
X-Chromosome Imputation
-199
Minimac: 1000 Genomes Imputation Cookbook
GWAS result QC and SNP harmonization
-2
Minimac: 1000 Genomes Imputation Cookbook
X Chromosome Imputation
-4
Minimac: 1000 Genomes Imputation Cookbook
Reference Haplotypes
+14
Minimac: 1000 Genomes Imputation Cookbook
Reference Haplotypes
+2
Minimac: 1000 Genomes Imputation Cookbook
Reference Haplotypes
+487
Minimac: 1000 Genomes Imputation Cookbook
X Chromosome Imputation
+2
