User contributions
19 October 2012
EPACTS for DIAGRAM
A. Convert dosage file into VCF format
+9
EPACTS for DIAGRAM
A. Convert dosage file into VCF format
+94
EPACTS for DIAGRAM
A. Convert dosage file into VCF format
+59
EPACTS for DIAGRAM
A. Convert doseage file into VCF format
+32
16 October 2012
9 October 2012
Minimac
Change log
+5
Minimac
using a MaCH reference panel
+340
Minimac
Multiprocessor Version
-11
Minimac
Download
+87
Minimac
Multiprocessor Version
+4
Minimac
Multiprocessor Version
+204
3 October 2012
Minimac: 1000 Genomes Imputation Cookbook
Reference based chunking
+1
Minimac: 1000 Genomes Imputation Cookbook
Reference based chunking
+3
Minimac: 1000 Genomes Imputation Cookbook
Reference based chunking
+6
Minimac: 1000 Genomes Imputation Cookbook
Reference based chunking
+536
Minimac: 1000 Genomes Imputation Cookbook
Reference based chunking
+138
Minimac: 1000 Genomes Imputation Cookbook
Further Time Savings
+65
Minimac Command Reference
Reference Haplotype Set
+368
Minimac
Change log
Minimac
Download
+70
24 September 2012
Test EPACTS for DIAGRAM
Download EPACTS
-10
Test EPACTS for DIAGRAM
no edit summary
+37
Test EPACTS for DIAGRAM
Download EPACTS
-8
Test EPACTS for DIAGRAM
Example
+4
Test EPACTS for DIAGRAM
Download EPACTS
+9
Test EPACTS for DIAGRAM
no edit summary
+36
Test EPACTS for DIAGRAM
no edit summary
+13
Test EPACTS for DIAGRAM
no edit summary
-415
Test EPACTS for DIAGRAM
Created page with '== 1. Download and install EPACTS == EPACTS is available for download [http://www.sph.umich.edu/csg/kang/epacts/download/index.html here]. If you want to use EPACTS in a…'
Minimac: 1000 Genomes Imputation Cookbook
X Chromosome Imputation
22 September 2012
11 September 2012
29 August 2012
VcfRefGen
no edit summary
+142
VcfRefGen
Download
+19
VcfRefGen
Example
-62
VcfRefGen
Example
+82
VcfRefGen
Example
-82
VcfRefGen
no edit summary
+538
VcfRefGen
no edit summary
+47
VcfRefGen
no edit summary
-9
Minimac
Questions and Comments
-1
Minimac
no edit summary
+142
VcfRefGen
no edit summary
+42
VcfRefGen
Created page with '''vcfRefGen''' is a tool for generating VCF reference panels for minimac imputation. It reduces VCF files by removing the info field, saving only the GT genotype field and removi…'
28 August 2012
27 August 2012
Minimac: 1000 Genomes Imputation Cookbook
Your Own Data
-5
Minimac: 1000 Genomes Imputation Cookbook
Imputation into Phased Haplotypes - minimac
+66
Minimac: 1000 Genomes Imputation Cookbook
Imputation into Phased Haplotypes - minimac
+417
Minimac: 1000 Genomes Imputation Cookbook
Imputation into Phased Haplotypes - minimac
-4
Minimac: 1000 Genomes Imputation Cookbook
Imputation into Phased Haplotypes - minimac
+23
