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Jump to navigationJump to search- 12:34, 14 December 2009 diff hist +199 SardiNIA
- 12:32, 14 December 2009 diff hist +76 Main Page
- 12:32, 14 December 2009 diff hist +16 SardiNIA →Medical Sequencing Project
- 12:31, 14 December 2009 diff hist +65 SardiNIA
- 12:30, 14 December 2009 diff hist +992 N SardiNIA Created page with '== Key References == If you are looking to learn about the project, I strongly recommend that you read the following papers Pilia G, Chen WM, Scuteri A, Orru M, Albai G, Dei …'
- 15:09, 8 December 2009 diff hist +770 Mantra.cpp current
- 15:02, 8 December 2009 diff hist +1,800 N Mantra.cpp New page: '''Mantra.cpp''' provides useful functions handling inheritance vectors. A call to Mantra::Prepare() will first list all the meioses in a pedigree (which constitute an inheritance vect...
- 03:32, 26 November 2009 diff hist +53 N Utility Library Created page with ' Parameters.h StringHash.h StringMap.h' current
- 03:31, 26 November 2009 diff hist +12 StringMap.h current
- 03:30, 26 November 2009 diff hist +345 N StringMap.h Created page with ''''StringMap.h''' declares classes that allow one to store a list of strings and associated items. The list is stored in sorted fashion. Inserts and deletes can be quite expensiv…'
- 03:26, 26 November 2009 diff hist +224 Parameters.h current
- 03:22, 26 November 2009 diff hist +854 N Parameters.h Created page with '''Parameters.h'' is a header file that defines a series of classes that are useful for processing command line parameters. == Example Usage == <source lang="cpp"> #include "…'
- 11:30, 24 November 2009 diff hist -40 BamGenotypeCheck
- 11:29, 24 November 2009 diff hist +30 N Lanecheck moved Lanecheck to BamIdentityCheck: renamed lane check to bamIdentityCheck which is more descriptive current
- 11:29, 24 November 2009 diff hist 0 m BamGenotypeCheck moved Lanecheck to BamIdentityCheck: renamed lane check to bamIdentityCheck which is more descriptive
- 11:28, 24 November 2009 diff hist -23 TrioCaller Blanked the page
- 14:21, 20 November 2009 diff hist -9 Karma-colorspace →Additional Information
- 14:20, 20 November 2009 diff hist -30 Karma-colorspace
- 14:19, 20 November 2009 diff hist -31 Karma-colorspace →Build Binary Reference Genome and Word Index
- 22:37, 19 November 2009 diff hist +47 Karma
- 17:28, 19 November 2009 diff hist -22 VcfCodingSnps
- 17:27, 19 November 2009 diff hist +90 Main Page →Sequence Analysis Tools
- 17:17, 19 November 2009 diff hist 0 m VcfCodingSnps moved AnnoVcf to VcfCodingSnps: Better name
- 10:06, 18 November 2009 diff hist +64 FastQValidator →Valid FastQ File Requirements
- 10:05, 18 November 2009 diff hist +98 FastQValidator →Valid FastQ File Requirements
- 23:30, 16 November 2009 diff hist +573 N FastQValidator Created page with '== Status == The FastQ Validator is on our Todo List. == Valid FastQ File Requirements == A valid fastQ file should meet the following requirements: * A base sequence sho…'
- 10:43, 16 November 2009 diff hist -1 Karma-colorspace →Input file requirement
- 10:43, 16 November 2009 diff hist -38 Karma-colorspace →Input file requirement
- 10:40, 16 November 2009 diff hist +6 Main Page →Welcome!
- 10:38, 16 November 2009 diff hist +233 Main Page →Welcome!
- 02:10, 15 November 2009 diff hist +1 Main Page →Variant Calling
- 01:52, 15 November 2009 diff hist +190 Abecasis Lab
- 01:49, 15 November 2009 diff hist +1 Abecasis Lab →Former Doctoral Students
- 01:49, 15 November 2009 diff hist +81 Abecasis Lab
- 01:48, 15 November 2009 diff hist +10 Abecasis Lab →Current Members
- 01:47, 15 November 2009 diff hist +831 N Abecasis Lab Created page with '== Current Members == === Research Faculty === Hyun Min Kang === Research Fellows === Bingshan Li === Graduate Students === Wei Chen Jun Ding Youna Hu Elizabeth Jewell Yanm…'
- 01:36, 15 November 2009 diff hist +223 N Genome Analysis Wiki:About Created page with 'This wiki documents useful tools and protocols for genome analysis. It is maintained by the Abecasis Lab at the [http://www.umich.edu University of Michigan] [http://csg.sp…' current
- 01:32, 15 November 2009 diff hist +116 GlfTrio →TODO
- 01:31, 15 November 2009 diff hist +171 GlfSingle
- 01:30, 15 November 2009 diff hist +2,153 N GlfMultiples Created page with ''''glfMultiples''' is a GLF-based variant caller for next-generation sequencing data. It takes a set of GLF format genotype likelihood files as input and generates a [[VC…'
- 00:53, 15 November 2009 diff hist +103 GLF
- 00:51, 15 November 2009 diff hist +10 GlfTrio →Filtering According to Depth and Map Quality
- 00:51, 15 November 2009 diff hist +39 GlfTrio →Basic Usage Example
- 00:48, 15 November 2009 diff hist +152 GlfTrio →Basic Usage Example
- 00:45, 15 November 2009 diff hist 0 GlfTrio →Filtering According to Depth and Map Quality
- 00:45, 15 November 2009 diff hist 0 GlfTrio →Basic Output Options
- 00:44, 15 November 2009 diff hist 0 GlfTrio →X Chromosome Variant Calling
- 00:43, 15 November 2009 diff hist 0 GlfTrio →Sample Labels
- 00:43, 15 November 2009 diff hist -8 GlfTrio →Filtering According to Depth and Map Quality
- 00:43, 15 November 2009 diff hist -8 GlfTrio →Basic Output Options