User contributions
19 December 2009
BAM
no edit summary
+76
SAM
Created page with 'The '''SAM Format''' is a text format for storing aligned reads. The current definition of the format is at http://samtools.sourceforge.net/SAM1.pdf BAM/SAM Specification. …'
Mapping Quality Scores
no edit summary
+670
18 December 2009
17 December 2009
CHARGE
Reference
-5
CHARGE
no edit summary
+88
Main Page
Read Mapping
+44
Mapping Quality Scores
no edit summary
+172
Mapping Quality Scores
Created page with ''''Mapping Quality Scores''' quantify the probability that a read is misplaced. They were introduced by Heng Li and Richard Durbin in their paper describing MAQ and are usually r…'
15 December 2009
CHARGE
Created page with ''''CHARGE''' is a consortium of several population based cohorts. The acronym stands for Cohorts for Health and Aging Related Genetic Epidemiology. == Participating Cohorts == …'
GWAS
Created page with ''''GWAS''' are genomewide association studies.'
14 December 2009
Main Page
no edit summary
-2
BAM
Created page with 'The '''BAM Format''' is a binary format for storing aligned reads. The current definition of the format is at http://samtools.sourceforge.net/SAM1.pdf BAM/SAM Specification…'
Talk:Examples of Read Mapping with Karma and BWA
Created page with 'We need a much more informative title for this page. Also, it needs to linked (in some sensible way) to other pages.'
Examples of Read Mapping with Karma and BWA
no edit summary
+1
Examples of Read Mapping with Karma and BWA
no edit summary
+13
Examples of Read Mapping with Karma and BWA
no edit summary
-2
Examples of Read Mapping with Karma and BWA
no edit summary
-6
SardiNIA
Key References
+4
SardiNIA
no edit summary
+142
SardiNIA
no edit summary
+199
Main Page
no edit summary
+76
SardiNIA
Medical Sequencing Project
+16
SardiNIA
no edit summary
+65
SardiNIA
Created page with '== Key References == If you are looking to learn about the project, I strongly recommend that you read the following papers Pilia G, Chen WM, Scuteri A, Orru M, Albai G, Dei …'
8 December 2009
Mantra.cpp
no edit summary
+770
Mantra.cpp
New page: '''Mantra.cpp''' provides useful functions handling inheritance vectors. A call to Mantra::Prepare() will first list all the meioses in a pedigree (which constitute an inheritance vect...
26 November 2009
Utility Library
Created page with ' Parameters.h StringHash.h StringMap.h'
StringMap.h
no edit summary
+12
StringMap.h
Created page with ''''StringMap.h''' declares classes that allow one to store a list of strings and associated items. The list is stored in sorted fashion. Inserts and deletes can be quite expensiv…'
Parameters.h
no edit summary
+224
Parameters.h
Created page with '''Parameters.h'' is a header file that defines a series of classes that are useful for processing command line parameters. == Example Usage == <source lang="cpp"> #include "…'
24 November 2009
BamGenotypeCheck
no edit summary
-40
Lanecheck
moved Lanecheck to BamIdentityCheck: renamed lane check to bamIdentityCheck which is more descriptive
BamGenotypeCheck
moved Lanecheck to BamIdentityCheck: renamed lane check to bamIdentityCheck which is more descriptive
mTrioCaller
Blanked the page
-23
20 November 2009
Karma-colorspace
Additional Information
-9
Karma-colorspace
no edit summary
-30
Karma-colorspace
Build Binary Reference Genome and Word Index
-31
19 November 2009
Karma
no edit summary
+47
VcfCodingSnps
no edit summary
-22
Main Page
Sequence Analysis Tools
+90
VcfCodingSnps
moved AnnoVcf to VcfCodingSnps: Better name
m
18 November 2009
16 November 2009
FastQValidator
Created page with '== Status == The FastQ Validator is on our Todo List. == Valid FastQ File Requirements == A valid fastQ file should meet the following requirements: * A base sequence sho…'
Karma-colorspace
Input file requirement
-1
Karma-colorspace
Input file requirement
-38
Main Page
Welcome!
+6
Main Page
Welcome!
+233
