User contributions
26 November 2012
21 November 2012
Biostatistics 666: Main Page
Class Notes
File:666.2011.02.pdf
uploaded a new version of "File:666.2011.02.pdf": Minor update; added empirical distribution of read pair distances from QPLOT
File:666.2010.05.pdf
uploaded a new version of "File:666.2010.05.pdf": Minor typo fixes
16 November 2012
14 November 2012
12 November 2012
File:666.2010.03.pdf
uploaded a new version of "File:666.2010.03.pdf": Adds a summary slide.
Biostatistics 666: Main Page
Class Notes
31 October 2012
File:666.17.pdf
uploaded a new version of "File:666.17.pdf"
File:666.16.pdf
uploaded a new version of "File:666.16.pdf": Minor typo fix.
29 October 2012
File:666.16.pdf
uploaded a new version of "File:666.16.pdf": Fixed look of slides with equations.
Biostatistics 666: Linkage Analysis in Sibling Pairs
Recommended Reading
-3
22 October 2012
3 October 2012
26 September 2012
18 September 2012
10 September 2012
5 September 2012
File:2011.666.01.pdf
uploaded a new version of "File:2011.666.01.pdf": Yet more minor edits, this time listing potential group projects.
File:2011.666.01.pdf
uploaded a new version of "File:2011.666.01.pdf": Minor update for 2012, adding more detail to HWE discussion, link to online class notes, and potential discussion of grading scheme
File:2011.666.01.pdf
uploaded a new version of "File:2011.666.01.pdf"
Biostatistics 666: Main Page
Course History
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Biostatistics 666: Main Page
Course History
+103
Biostatistics 666: Main Page
Standards of Academic Conduct
+116
Biostatistics 666: Main Page
Course History
+12
Biostatistics 666: Main Page
Office Hours
-16
Biostatistics 666: Main Page
Scheduling
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Biostatistics 666: Main Page
Objective
+19
Biostatistics 666: Main Page
Problem Set Solutions
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8 June 2012
1 June 2012
User talk:Michael
Welcome!
mUser:Michael
Creating user page with biography of new user.
mKarma
no edit summary
+333
13 April 2012
5 April 2012
8 February 2012
TrioCaller
Converting Alignments to BAM format
+1
TrioCaller
Genotype Refinement Using Linkage Disequilibrium Information (TrioCaller)
+6
TrioCaller
Genotype Refinement Using Linkage Disequilibrium Information (TrioCaller)
-92
TrioCaller
Genotype Refinement Using Linkage Disequilibrium Information (TrioCaller)
+102
TrioCaller
Alternative way to call variants
+135
TrioCaller
Initial set of variant calls
-8
TrioCaller
Mapping Reads to The Genome
-405
TrioCaller
Building an Index for Short Read Alignment
+91
TrioCaller
Required Software
-61
TrioCaller
Download with example datasets
+9
23 January 2012
ThunderVCF
Created page with 'This a modified version of MACH, designed for the accurate genotyping of low pass sequence data from unrelated individuals and included in the UMAKE download. The tool requi…'
Tutorial: Low Pass Sequence Analysis
Example Dataset
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Tutorial: Low Pass Sequence Analysis
Example Dataset