User contributions
11 July 2014
SeqShop: Analysis of Structural Variation Practical, June 2014
Running GotCloud/GenomeSTRiP Metadata Pipeline
-6
SeqShop: Analysis of Structural Variation Practical, June 2014
Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself?
-72
10 July 2014
19 June 2014
SeqShop: Genetic Association Analysis Practical, June 2014
Setup your run environment
-1
SeqShop: Genetic Association Analysis Practical, June 2014
no edit summary
+9
SeqShop: Genetic Association Analysis Practical, June 2014
Goals of This Session
SeqShop: Genetic Association Analysis Practical, June 2014
Goals of This Session
+2
SeqShop: Genetic Association Analysis Practical, June 2014
no edit summary
+117
File:Seqshop association practice 2014 06.pdf
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File:Seqshop association 2014 06.pdf
Hmkang uploaded a new version of "File:Seqshop association 2014 06.pdf"
File:Seqshop association 2014 06.pdf
no edit summary
SeqShop: Genetic Association Analysis Practical, June 2014
Phenotype Information
-300
SeqShop: Genetic Association Analysis Practical, June 2014
Setup your run environment
+43
SeqShop: Genetic Association Analysis Practical, June 2014
no edit summary
+3,991
File:Single.zoom.22.36995620.png
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File:Single.epacts.mh.png
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File:Single.epacts.qq.png
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File:Emmax.epacts.qq.pdf
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SeqShop: Genetic Association Analysis Practical, June 2014
no edit summary
+433
SeqShop: Genetic Association Analysis Practical, June 2014
Annotating Variants with EPACTS
+536
SeqShop: Genetic Association Analysis Practical, June 2014
Annotating Variants with EPACTS
+1,777
SeqShop: Genetic Association Analysis Practical, June 2014
Created page with "(''WARNING: Under Construction'') == Goals of This Session == * Understand how to annotate variants using EPACTS * Understand how to run single variant association analysis u..."
EPACTS
no edit summary
18 June 2014
File:Seqshop cnv partb 2014 06.pdf
Hmkang uploaded a new version of "File:Seqshop cnv partb 2014 06.pdf"
File:Seqshop cnv partb 2014 06.pdf
Hmkang uploaded a new version of "File:Seqshop cnv partb 2014 06.pdf"
SeqShop: Analysis of Structural Variation Practical, June 2014
Goals of This Session
+1
SeqShop: Analysis of Structural Variation Practical, June 2014
Goals of This Session
-2
SeqShop: Analysis of Structural Variation Practical, June 2014
Goals of This Session
+102
File:Seqshop cnv partb 2014 06.pdf
no edit summary
SeqShop: Analysis of Structural Variation Practical, June 2014
no edit summary
-35
SeqShop: Analysis of Structural Variation Practical, June 2014
Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
-2
SeqShop: Analysis of Structural Variation Practical, June 2014
Running GotCloud/GenomeSTRiP Metadata Pipeline
+1
SeqShop: Analysis of Structural Variation Practical, June 2014
Running GotCloud/GenomeSTRiP Metadata Pipeline
+10
SeqShop: Analysis of Structural Variation Practical, June 2014
Why use GenomeSTRiP?
+134
SeqShop: Analysis of Structural Variation Practical, June 2014
Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself?
SeqShop: Analysis of Structural Variation Practical, June 2014
Sequnce Alignment Files: BAM Files and Index Files
-7
SeqShop: Analysis of Structural Variation Practical, June 2014
Sequnce Alignment Files: BAM Files and Index Files
+48
SeqShop: Analysis of Structural Variation Practical, June 2014
Running GotCloud/GenomeSTRiP Discovery Pipeline
+147
SeqShop: Analysis of Structural Variation Practical, June 2014
no edit summary
+1
SeqShop: Analysis of Structural Variation Practical, June 2014
no edit summary
-8,894
SeqShop: Analysis of Structural Variation Practical, June 2014
What does a real SV look like?
+1
SeqShop: Analysis of Structural Variation Practical, June 2014
Running GotCloud/GenomeSTRiP Discovery Pipeline
+1,988
File:Genomestrip thirdparty screenshot.png
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File:Genomestrip genotype screenshot.png
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File:Igvsvexample.png
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SeqShop: Analysis of Structural Variation Practical, June 2014
How many variants are filtered out?
+699
File:Genomestrip filter description.png
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SeqShop: Analysis of Structural Variation Practical, June 2014
How many variants are filtered out?
